

Overview
We are excited to have launched our lab in 2025 within the Division of Rheumatology, Inflammation, & Immunity at Brigham and Women’s Hospital and Harvard Medical School in Boston, Massachusetts.
Located in the Hale Building for Transformative Medicine in the Longwood area, our lab is equipped with cutting-edge facilities, including a cellular profiling hub (single cell droplet and spatial transcriptomics), flow cytometry core, histopathology core, molecular imaging core, and a mouse vivarium. This advanced setup positions us at the forefront of autoimmune disease research, particularly in conditions such as lupus nephritis. We promote interdisciplinary collaboration with convenient access to Brigham and Women’s Hospital patient clinics and Harvard Medical School resources and collaborators.
Our Mission
As a translational laboratory, our mission is to identify and validate novel therapeutic targets in autoimmune diseases, especially lupus nephritis and rheumatoid arthritis. We employ a 'bed-to-bench' approach, focusing on macrophages and their roles in tissue damage and repair within the kidneys and synovial tissue affected by these conditions. Ultimately, our goal is to elucidate mechanisms that pave the way for novel drug development.


A human-mouse atlas of intrarenal myeloid cells in lupus nephritis identifies conserved macrophages associated with the disease
Hoover PJ, Raparia C, Lieb DJ, Tzur Y, Kang J, Arazi A, Leavitt R, Shah S, Simmons D, Li S, Peters M, Eisenhaure T, Cooper TJ, Gurajala SS, Xiao Q, Mishra R, Menon R, Kretzler M, Sonny A, Demeke D, Hodgin J, Guthridge J, Fava A, Clancy R, Putterman C, Izmirly P, Belmont HM, Kalunian K, Kamen D, Wofsy D, Buyon J, James JA, Petri M, Diamond B, Raychaudhuri S, Shen Orr SS, The Accelerating Medicines Partnership RA/SLE network, Hacohen N, Davidson A. J Exp Med. 2025 Nov 3;222(11):e20241873. doi: 10.1084/jem.20241873
A population-scale atlas of blood and tissue in lupus nephritis
Siddarth Gurajala, Nicholas Sugiarto, Michelle Curtis, and others, aims to enhance the understanding of lupus nephritis at a molecular level. Siddarth Gurajala, Nicholas Sugiarto, Michelle Curtis, Tom Eisenhaure, Arnon Arazi, Andrea Fava, Qian Xiao, Joseph Mears, Brad Rovin, Celine C. Berthier, Peter Izmirly, Jennifer Barnas, Paul J. Hoover, Michael Peters, Raktima Raychowdhury, Alice Horsberger, Saori Sakaue, Yu Zhao, Richard A. Furie, Michael Belmont, Dave Hildeman, E. Steve Woodle, Maria Dall’Era, Chaim Putterman, Diane L. Kamen, Maureen A. McMahon, Jennifer Grossman, Ken Kalunian, Jeffrey Hodgin, Fernanda Payan-Schober, William Apruzzese, Harris Perlman, Carla M. Cuda, David Wofsy, Joel M. Guthridge, Jennifer H. Anolik, Judith A. James, Accelerating Medicines Partnerships Rheumatoid Arthritis/Systemic Lupus Erythematosus, Deepak A. Rao, Anne Davidson, Michelle A. Petri, Jill P. Buyon, Nir Hacohen, Betty Diamond, Soumya Raychaudhuri. Published in bioRxiv on 2025.08.11.669754, this work is pivotal for advancing treatment strategies in lupus nephritis, offering a comprehensive view of the immune landscape. For more information, refer to doi: doi.org/10.1101/2025.08.11.669754.
An atlas of healthy and injured cell states and niches in the human kidney
Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira, Kian Kalhor, Daria Barwinska, Edgar A Otto, Michael Ferkowicz, Dinh Diep, Nongluk Plongthongkum, Amanda Knoten, Sarah Urata, Laura H Mariani, Abhijit S Naik, Sean Eddy, Bo Zhang, Yan Wu, Diane Salamon, James C Williams, Xin Wang, Karol S Balderrama, Paul J Hoover, Evan Murray, Jamie L Marshall, Teia Noel, Anitha Vijayan, Austin Hartman, Fei Chen, Sushrut S Waikar, Sylvia E Rosas, Francis P Wilson, Paul M Palevsky, Krzysztof Kiryluk, John R Sedor, Robert D Toto, Chirag R Parikh, Eric H Kim, Rahul Satija, Anna Greka, Evan Z Macosko, Peter V Kharchenko, Joseph P Gaut, Jeffrey B Hodgin, KPMP Consortium, Michael T Eadon, Pierre C Dagher, Tarek M El-Achkar, Kun Zhang, Matthias Kretzler, Sanjay Jain Published in Nature, Volume 619, Pages 585–594 (2023), the research provides a detailed examination of the cellular landscape in the human kidney, paving the way for advancements in treatment strategies.
The immune cell landscape in the kidneys of patients with lupus nephritis
Arazi A, Rao DA, Berthier CC, Davidson A, Liu Y, Hoover PJ, Chicoine A, Eisenhaure TM, Jonsson AH, Li S, Lieb DJ, Zhang F, Slowikowski K, Browne EP, Noma A, Sutherby D, Steelman S, Smilek DE, Tosta P, Apruzzese W, Massarotti E, Dall'Era M, Park M, Kamen DL, Furie RA, Payan-Schober F, Pendergraft WF, McInnis EA, Buyon JP, Petri MA, Putterman C, Kalunian KC, Woodle ES, Lederer JA, Hildeman DA, Nusbaum C, Raychaudhuri S, Kretzler M, Anolik JH, Brenner MB, Wofsy D, Hacohen N, and Diamond B, was published in Nat Immunol. 2019 07; 20(7):902-914. PMID: 31209404.

Dr. Hoover is a rheumatologist and translational scientist specializing in autoimmune diseases. As Director of Translational Research in Lupus Nephritis at Brigham and Women’s Hospital, he studies immune responses and macrophage roles in tissue damage and repair. He earned his MD and PhD in molecular and cellular physiology from Stanford and completed his rheumatology training at Brigham and Women’s, conducting postdoctoral research at the Broad Institute of MIT and Harvard.

Wonhee Han is a postdoctoral researcher studying macrophage-stromal interactions that drive repair and injury in lupus nephritis. His work includes developing LN-associated macrophage and 3D kidney models for personalized lupus nephritis research. He utilizes CRISPR-Cas9 genetic screening to identify key regulators involved in macrophage differentiation and activation.

Haniya's is a bioinformatician who studies the immune response in kidney tissue and is focused and identifying patterns of injury and repair. Her work uses single cell approaches and clinical data.

Raghav is a Bioinformatician in the Hoover and Gravallese Labs, where his research focuses on autoimmune diseases, particularly lupus nephritis and rheumatoid arthritis. By utilizing both human data and mouse models, he aims to uncover shared disease mechanisms related to lupus nephritis. His work integrates bulk and single-cell multiomics with spatial transcriptomics to identify disease drivers, map altered molecular pathways, and enhance our understanding of immune changes, particularly the role of macrophages in inflammation and tissue repair. Additionally, he highlights potential therapeutic targets for treating these conditions.

Nori is a Clinical Research Coordinator involved in various clinical trials, particularly focusing on lupus nephritis and arthritis. In Dr. Hoover's Lab, Nori plays a vital role in ongoing research that explores the function of macrophages in lupus nephritis. For each project, Nori helps identify patients who meet the diagnostic criteria and creates databases using the lupus registry and chart reviews. This data is crucial for pinpointing biosamples that contribute to discovering potential therapeutic targets for our studies.

Megan is an Instructor in Medicine at Brigham and Women’s Hospital, Harvard Medical School, and an ANRF Gale “Morrie” Granger Fellow. She is a translational rheumatology researcher specializing in myeloid functions in Rheumatoid Arthritis, with interests in immunometabolism and early disease biomarkers. Megan earned her BSc in Biomedical, Health, and Life Sciences from University College Dublin and completed her PhD at Trinity College Dublin as an Irish Research Council Scholar. In 2022, she joined Harvard’s Gravallese lab as a visiting research fellow and now as a postdoctoral fellow, studying SPP1+ macrophages and the joint microenvironment's impact on trained immunity. She aims to further explore the interactions between metabolism, bone, and the immune system in RA. She is a research associate with in the Hoover Lab, providing important insights into macrophage.
Send us a message using this form to discuss topics related to autoimmune diseases, including lupus nephritis, the role of macrophages, and various therapeutic targets. We are always looking for passionate post-docs, graduate students, research assistants, and undergrads. Please send your application and CV to phoover@bwh.harvard.edu.
Hale Building for Transformative Medicine at Brigham and Women's Hospital, 60 Fenwood Rd, Boston, MA 02115, USA
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